Papers and codes

Profiles in Google Scholar and GitHub. If you need published version of a paper and it's not provided below, send me an email arghya.d@srmap.edu.in. * denotes my corresponding (or co-corresponding) authorship.

1. Dynamical system analysis of quantum tunneling in an asymmetric double-well potential
   Das and Dutta*
   Preprint: arXiv.2510.24100 (2025)
   pdf; code
2. Multi-scale classification decodes the complexity of the human E3 ligome
   Dutta, Cristiani, Nikte, Eisert, Matthess, Markusic, Tudose, Becht, Shah, Mosler, Husnjak, Dikic, Kaulich, and Bhaskara
   Nature Communications (2025)
   pdf; related webpage
3. Identification of potential selective autophagy receptors from protein-content profiling of autophagosomes
   Cristiani, Dutta, Poveda-Cuevas, and Bhaskara
   Journal of Cellular Biochemistry (2024)
   pdf
4. Data-mining unveils structure–property–activity correlation of viral infectivity enhancing self-assembling peptides
   Kaygisiz, Rauch-Wirth, Dutta, Yu, Nagata, Bereau, Münch, Synatschke, and Weil
   Nature Communications (2023)
   pdf; code
5. Inverse design of viral infectivity-enhancing peptides fibrils from continuous protein-vector embeddings
   Kaygisiz, Dutta, Rauch-Wirth, Synatschke, Münch, Bereau, and Weil
   Biomaterials Science (2023)
   pdf; code
6. Technology licensing and collusion
   Sen, Minocha, and Dutta
   International Journal of Economic Theory (2023)
7. Identifying sequential residue patterns in bitter and umami peptides
   Dutta*, Bereau, and Vilgis
   ACS Food Science & Technology (2022)
   pdf; code
8. Data-driven equation for drug–membrane permeability across drugs and membranes
   Dutta, Vreeken, Ghiringhelli, and Bereau
   The Journal of Chemical Physics (2021)
   pdf; input script
9. Inserting small molecules across membrane mixtures: Insight from the potential of mean force
   Centi, Dutta, Parekh, and Bereau
   Biophysical Journal (2020)
   pdf
10. Sequence-optimized peptide nanofibers as growth stimulators for regeneration of peripheral neurons
    Schilling, Mack, Lickfett, Sieste, Ruggeri, Sneideris, Dutta, Bereau, Naraghi, Sinske, Knowles, Synatschke, Weil, and Knöll
    Advanced Functional Materials (2019)
    pdf
    Featured in the Highlights from the Yearbook 2019 from the Max Planck Society.
11. Stationary mass distribution and non-locality in models of coalescence and shattering
    Connaughton, Dutta, Rajesh, Siddharth, and Zaboronski
    Physical Review E (2018)
    pdf
12. Universality properties of steady driven coagulation with collisional evaporation
    Connaughton, Dutta, Rajesh, and Zaboronski
    Europhysics Letters (2017)
    pdf
13. Holographic entanglement entropy in imbalanced superconductors
    Dutta and Modak
    Journal of High Energy Physics (2014)
    pdf
14. Dynamical structure factor of Fulde–Ferrell–Larkin–Ovchinnikov superconductors
    Dutta and Bhattacharjee
    AIP Conference Proceedings (2013)
    pdf
15. Lifshitz tricritical point and its relation to the FFLO superconducting state
    Dutta and Bhattacharjee
    Physics Letters A (2013)
    pdf
16. Competing order parameters and a tricritical point with a difference
    Dutta and Bhattacharjee
    Physica B (2012)
    pdf